0.1.0 (2013-12-30) ################## *changes since 0.0.3 (2013-10-21)* Bug Fixes $$$$$$$$$ New Features $$$$$$$$$$$$ Changes $$$$$$$ Security $$$$$$$$ Other Changes $$$$$$$$$$$$$ * added Apache license and code boilerplate to all source files and scripts [`3d692ea0d5a2 `_] * update default host to uta.invitae.com CNAME [`605e6e399e5f `_] * updated README; added sbin/uta-shell [`c3931dda575b `_] * `#58 `_: migrated uta to publicly-accessible RDS instance and updated uta defaults [`d609a81d1ec9 `_] * updated sbin/uta-pg-to-sqlite to include protein_hash and meta tables [`bade1ac7f98c `_] * added sbin/fasta-hash-to-tsv [`af8cdea82e96 `_] * updated uta-pg-to-sqlite script to embed version number and name file (name no longer accepted from commandline) [`cc8598eeedc8 `_] * uta-pg-to-sqlite: order records and output loading info [`785501f0e8d4 `_] * use uta0 database by default (rather than reece's db) [`59d60c55cc35 `_] * `#62 `_: synchronized setup files among UTA program components [`4319672439a1 `_] * updated README.rst [`a2b81a989aff `_] * added jenkins target to makefile [`7f509a0b2a0e `_] * bring back ez_setup [`1b8cec6df88a `_] * Makefile: new rule ve-test to execute tests in a fresh ve (as in with jenkins) [`779fc64e42d9 `_] * removed localhost UTA_DB_URL setting in Makefile [`e2948fc5577c `_] * changed NC_000014.10 to NC_000014.8 [`8a0f92bd39ea `_] * added get_tx_seq() method [`38424d1df2d9 `_] * removed mapping code that now lives in hgvs [`e353859717a1 `_] * doc/ updates (incomplete) [`4323c2a0fec1 `_] * fetch-tx-* scripts: include gene name in response [`c8b55ca6bcf5 `_] * start feature branch [`32732d3ea403 `_] * fixed start <= end for negative coordinates [`432b799d29db `_] * corrected NC number for ch14 in genomeutils [`e8aea8436a46 `_] * fixed ci_to_human with additonal logic checks [`f547aa8355dc `_] * updating intron mapping coordinates [`16bcb4919240 `_] * format edits [`bb25bc960fe3 `_] * tests and bug fixes for offsets and strands [`06d5e4a0fcdf `_] * transcriptmapper with offsets [`4dc927d62610 `_] * first offset commit [`6d7f936c0304 `_] * updated webservice index.html help [`221cbbb5dfec `_] * fixed strand bug in webservice api hgvs to genomic coords [`d475267ab253 `_] * Created a web directory and moved the webservice in there for future expansion. Created a help page and additional API call for NM to genomic coords. Restructured the API links and versioned the URLs [`6725c420f067 `_] * added NEFL-dbSNP to the tests [`c887969c51a6 `_]